PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 527aa    MW: 58992.9 Da    PI: 7.0238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17342388455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  XP_004499540.1 342 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 388
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-19335396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-20336404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.91E-18341392No hitNo description
PfamPF000104.8E-15342388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-18344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MNDSVSEWNF ESDTYVTNQK KSIGLDHELV ELLWQNGQVV LHSQTNRKPI TSRHVQKNLQ  60
STTLRTNETF GSSSNLIQDD ETVSWIHYPL EDPLEQELCS NLLSELSPCD DVVESYKQIR  120
NFEEGKFSKL DASSDPHANI NSQPSNLKPS FVQEFSKPDQ RFHHAPDSSH KILNFSHFSR  180
PPNVSSVTGK GDAHFRDKVT SGNLSQGDIR ECSAMTVVSS YCGSNHIPQD QDVSRVSSNG  240
VWNTTLSAEP KPVKDDIHKT IPRHEKGKSE MIEPTVTSSS GGSGSSLGKT SSLSTRSHGQ  300
KRKIIDVEDS VEQSEDTELK SAVRNKVSQR SGSARRNRAA EVHNLSERRR RDRINEKMKA  360
LQQLIPHSSK TDKASMLEEA IEYLKSLQLQ LQVMWMGSGM TPMMLPGFQH YMSQMGMGMT  420
APSFPPLQNP MQLQRIPLDQ SVQTPNQTLM CPNPILGAFN YQNQIQNPAL SDQYARYMGY  480
HLMQNASQPM SMYRYGPQGV QQTQAMIPPS NSSGPIRGVV NVDDSVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346351ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150389e-54AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499540.10.0PREDICTED: transcription factor PIF4-like isoform X3
TrEMBLA0A072UW390.0A0A072UW39_MEDTR; Transcription factor
STRINGGLYMA18G14530.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-62phytochrome interacting factor 4